x3x3 — Rate matrix constructed from rate matrices on each triplet position

Usage

x3x3(rates1: CTMC<n>, rates2: CTMC<n>, rates3: CTMC<n>, a: t) → CTMC<t>

Type constraints: Triplets<t,n>

Arguments

rates1:

Rates for position 1

rates2:

Rates for position 2

rates3:

Rates for position 3

a:

The Triplets alphabet

Default: The alphabet in the current context

Original default expressions
a 
get_state(alphabet)

Description

A triplet rate matrix constructed from separate nucleotide rate matrices for the first, second, and third codon position

Examples

q=HKY85(a=getNucleotides); x3x3(q,q,q)

See also

x3