RS05 — Redelings & Suchard (2005) model of
insertions and deletions
Usage
RS05(logProb: Double, meanLength: Double, tau: Double, topology: Topology) → IndelModel
Arguments
A default beginning with ~ specifies a prior
distribution.
-
logProb -
Default:
~Laplace(-4, 0.707) -
meanLength -
Default:
~ShiftedExponential(10,1) -
tau -
Default:
0.001 -
topology -
Default: The topology in the current context
Original default expressions
-
topology -
get_state(topology)
Citation
Redelings, Benjamin D; Suchard, Marc A (2005). Joint Estimation of Alignment and Phylogeny.. Systematic Biology 54(3): 401-418. DOI: 10.1080/10635150590947041