LG_freq — The LG amino-acid frequencies
Usage
LG_freq(a: a)
→ Map<String,Double>
Arguments
-
a: -
The alphabet
-
Default: The alphabet in the current context
Original default expressions
-
a -
get_state(alphabet)
Description
A fixed frequency vector from the dataset in the WAG paper.
Examples
LG +> F(lg08_frequencies)Citation
Le, Si Quang; Gascuel, Olivier (2008). An Improved General Amino Acid Replacement Matrix. Molecular Biology and Evolution 25(7): 1307--1320. DOI: 10.1093/molbev/msn067