`LG4X`

Usage

LG4X(rateDist: DiscreteDist<Double>) → DiscreteDist<CTMC<AA>>

Arguments

A default beginning with ~ specifies a prior distribution.

rateDist:: Rates for each category; Default: ~DirichletOnDirichlet(4,2,2)

Description

Empirically derived collection of 4 rate matrices, designed for free ASRV.

Examples

LG4X

Citation

Le, Si Quang; Dang, Cuong Cao; Gascuel, Olivier (2012). Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates. Molecular Biology and Evolution 29(10): 2921--2936. DOI: 10.1093/molbev/mss112