`JTT`

Usage

JTT(a: a)
→ ExchangeModel<AA>

Arguments

a:: The alphabet.; Default: The alphabet in the current context

Original default expressions

a

get_state(alphabet)

Description

Empirically derived exchangability matrix for general proteins

Examples

JTT

JTT +> F

Citation

Jones, David T.; Taylor, William R.; Thornton, Janet M. (1992). The rapid generation of mutation data matrices from protein sequences. Bioinformatics 8(3): 275--282. DOI: 10.1093%2Fbioinformatics%2F8.3.275