**trees-pair-distances** -- Compute the mean (stddev) of all leaf-leaf distances.

**trees-pair-distances** < in-file

Compute the mean (stddev) of all leaf-leaf distances.

**-h**,**--help**- produce help message
**--skip***arg*(=0)- number of tree samples to skip
**--max***arg*- maximum number of tree samples to read
**--subsample***arg*(=1)- factor by which to sub-sample
**--RF**- just count the number of branches
**--var**- report standard deviation of branch lengths instead of mean

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com.